Ocean 621: Biological Oceanography Spring 2011

(Monday, Wednesday, Friday 9:30-10:20 AM; MSB 315)

Instructors:

Matthew Church, Office: MSB 614, 956-8779, mjchurch@hawaii.edu

Karen Selph, Office: MSB 608, 956-7941, selph@hawaii.edu

Laura Grange, Office: MSB 621, 956-9540, grangel@hawaii.edu

Guest Lecturers:

Craig Smith, Office MSB 617, 956-7776, craigsmi@hawaii.edu

Grieg Steward, Office MSB 631, 956-6775, grieg@hawaii.edu

Course Overview:

Biological Oceanography (OCN 621) is one of several required core courses for graduate students in the Department of Oceanography at the University of Hawaii.  The course meets three times each week (MWF) from 9:30-10:20 AM in the Marine Science Building classroom 315.  Lectures and exams will cover fundamental concepts in biological oceanography, including topics pertinent to the study of the ecology of pelagic and benthic organisms.  Lectures will include information related to the biomass and productivity of diverse marine ecosystems, assessment of bioelemental cycling of marine organisms, and examination of environmental controls on the growth and mortality of benthic and pelagic organisms.  The course will be divided into three primary sections: 1) planktonic production and elemental cycling, 2) pelagic food web dynamics and fisheries oceanography, and 3) ecology of marine benthic habitats.

Grades will be earned based on two criteria: 1) Regular attendance and participation in weekly lectures (10%); and 2) Performance on the three written, in class exams (30% each).  Students are expected to attend all lectures having become familiar with the reading material assigned for each lecture.

Student Learning Outcomes:

1) Students should be able to define the major forms of life in the sea, describe the characteristics that distinguish these forms, and describe how these forms relate to each other ecologically.

2) Students should be able to explain how marine organisms influence cycling of bioelements.

3) Students should be able to describe prominent characteristics of the primary marine habitats.

4) Students should be able to define processes that control the biomass, growth, and productivity of organisms in the marine environment.

5) Students should be able to describe methodological approaches appropriate for evaluating the biomass, growth, and mortality of plankton, nekton, and sessile marine organisms.


Grading:

10% class participation

30% Exam I (Bioenergetics, production and respiration, biogeochemical fluxes)

30% Exam II (Zooplankton, pelagic ecology, fisheries oceanography)

30% Exam III (Benthic oceanography and ecology)

There is no required textbook for this course; however, instructors will assign reading material in the form of papers or book chapters.  Students are expected to be familiar with material in these assigned readings.


Course Schedule (Jan. 10-Feb. 18, 2011) - Classes meet 9:30-10:20 AM

Date

Topic

Lecturer

Reading

Monday

Jan. 10

Introduction to Biological Oceanography

Church

 

Wednesday

Jan. 12

Plankton metabolism and bioenergetics

Church

 Falkowski et al. (2008)

Friday

Jan. 14

The ocean at the microscale

Steward

 

Monday

Jan. 17

NO CLASSES -

MLK Day

 

 

Wednesday

Jan. 19

Carbon cycling and the biological pump

Church

Sarmiento and Gruber (2002); Feely et al.(2008)

Friday

Jan. 21

Carbon cycling (part II) -  the biological pump

Church

 Whitman (1998)

Monday

Jan. 24

Photosynthetic biomass and marine phytoplankton

Church

 Cullen (2001)

Wednesday

Jan. 26

Photosynthesis and primary production

Church

 

Friday

Jan. 28

Primary production -  cont.

Church

Sverdrup (1953)

Monday

Jan. 31

Dissolved organics matter

Church

Carlson et al. (1994), Kirchman (2004);  

Wednesday

Feb. 2

The microbial loop

Church

 Pomeroy (1979), Azam et al. (1983), Ducklow (2000)

Friday

Feb. 4

Plankton respiration and community metabolism

Church

del Giorgio and Duarte (2002), Riser and Johnson (2008

Monday

Feb. 7

The nitrogen cycle

Church

 Gruber (2008), Karl et al. (2008)

Wednesday

Feb. 9

Nutrient cycling (continued from previous lecture)

Church

Arrigo (2005)

Friday

Feb. 11

The HNLC Condition

Church

Coale et al. (1996), Boyd et al. (2007)

Monday

Feb. 14

NO CLASS

ASLO meeting

 

 

Wednesday

Feb. 16

Viruses in the sea

Steward

 

Friday

Feb. 18

Biogeochemical and ecological consequences of marine viruses

Steward

 

 


Course Schedule (Feb. 21-April 4, 2011) - Classes meet 9:30-10:20 AM

 

Date

 

Topic

 

Lecturer

 

Reading

Monday

Feb. 21

NO CLASSES -

PRESIDENTS DAY

 

 

Wednesday

Feb. 23

Review Session

Church

 

Friday
March 25
Review Session Church

 

Monday

Feb. 28

EXAM #1

Church

 

Wednesday 

March 2

Pelagic Consumers-

Metazoan Zooplankton

Selph

 

Friday

March 4

Pelagic Consumers

Selph

 

Monday

March 7

Pelagic Consumers-Energetics

Selph

 

Wednesday 

March 9

Pelagic Community Ecology-Methods

Selph

 

Friday

March 11

Pelagic Community Ecology

Selph

 

Monday

March 14

Pelagic Community Ecology-Food webs 1

Selph

 

Wednesday

March 16

Pelagic Community Ecology-Food webs 2

Selph

 

Friday 

March 18

Pelagic Community Ecology-Food webs 3

Selph

 

Monday

March 21

NO CLASS

-SPRING BREAK

 

 

Wednesday

March 23

NO CLASS

-SPRING BREAK

 

 

Friday

March 25

NO CLASS

-SPRING BREAK

 

 

Monday

March 28

Fisheries Oceanography

Selph

 

 

Wednesday

March 30

Fisheries Oceanography – Management

Selph

 

Friday

April 1

Review session

Selph

 

Monday

April 4

EXAM #2

Selph

 

 


Course Schedule (April 6-May 13, 2011)- - Classes meet 9:30-10:20 AM

Date

Topic

Lecturer

Reading

Wednesday

April 6

Introduction to Benthic Ecology

Smith

 

Friday

April 8

Benthic Generalizations & Sediment Microbiology

Smith

 

Monday

April 11

Basic Sediment Geochemistry & Benthic Energy Resources

Grange

 Levinton Chapt. 13

Wednesday

April 13

Deposit Feeding

Grange

 

Friday

April 15

Suspension Feeding

Grange

 Wildish and Kristmanson

Monday

April 18

Reproduction and recruitment

Grange

 Levinton Chapt. 5

Wednesday

April 20

Distribution patterns: Depth Zonation

Grange

 

 Smith et al. 2008, Levinton Chapt. 17

Friday

April 22

NO CLASSES -

GOOD FRIDAY

 

 

Monday

April 25

Habitats – Deep sea reducing habitats

Grange

 VanDover et al. 2002

Wednesday

April 27

Habitats – High Latitudes

Grange

 Clarke et al. 2007

Friday

April 29

Habitats – Seamounts

Grange

 Samadi et al. 2007

Monday

May 2

Habitats – Coral Reefs

Grange

 Knowlton and Jackson 2001,

Roberts 2006

Wednesday

May 4

Benthic pollution

Grange

Kaiser et al. 2005,

Nilsson and Rosenberg 2000

Friday

May 6

NO CLASSES

 

 

Monday

May 9

NO CLASSES -

Final exam week

 

 

Wednesday

May 11

NO CLASSES-

Final exam week

 

 

Friday

May 13

EXAM #3

Grange