Biogeochemical Stable Isotope Facility

School of Ocean and Earth Science and Technology

Popp Lab

Popp Lab Publications (partial list)

Shih J.L and Popp B.N (2020) Assessment of an invasive tropical sponge on coral reefs in Hawaii. Pacific Science 74(2):175-187, doi:10.2984/74.2.7.

Romero-Romero S., Kaapu-Lyons C.A., Umhau B.P. Benitez-Nelson C.R., Hannides C.C.S, Close H.G., Drazen J.C. and Popp B.N. (2020) Deep zooplankton rely on small particles in response to low particle flux. Limnology and Oceanography Letters doi: 10.1002/lol2.10163.

Motta L.C., Blum J.D., Popp B.N., Drazen J.C., and Close H.G. (2020) Mercury stable isotopes in flying fish as a monitor of phytochemical degradation of methylmercury in the Atlantic and Pacific Oceans. Marine Chemistry 223:103790, https://doi.org/10.1016/j.marchem.2020.103790.

Shih J.L., Selph K.E., Wall C.B., Wallsgrove N.J., Lesser M.P and Popp B.N. (2020) Trophic ecology of the tropical Pacific sponge Mycale grandis inferred from amino acid compound specific isotopic analyses. Microbial Ecology 79:495-510, https://doi.org/10.1007/s00248-019-01410-x. (2)

Gelippi, Michelle, et al. "Tracing gestation and lactation in free ranging gray whales using the stable isotopic composition of epidermis layers." Plos one 15.10 (2020): e0240171.

Lemons, Garrett E., et al. "Nitrogen isotope fractionation of amino acids from a controlled study on the green turtle (Chelonia mydas): expanding beyond Glx/Phe for trophic position." Marine Biology 167.10 (2020): 1-13.

Dores, Daniel, et al. "Implications for groundwater recharge from stable isotopic composition of precipitation in Hawai'i during the 2017 2018 La Nina." Hydrological Processes (2020).

Tokuda, Andrew K., et al. "Trophic interactions of megafauna in the Mariana and Kermadec trenches inferred from stable isotope analysis." Deep Sea Research Part I: Oceanographic Research Papers 164 (2020): 103360.

Fackrell, Joseph K., et al. "Stable isotopes of precipitation and groundwater provide new insight into groundwater recharge and flow in a structurally complex hydrogeologic system: West Hawaii, USA." HydJ (2020).

Hannides, Cecelia CS, et al. "Seasonal dynamics of midwater zooplankton and relation to particle cycling in the North Pacific Subtropical Gyre." Progress in Oceanography 182 (2020): 102266.

Wall, Christopher B., et al. "Divergent symbiont communities determine the physiology and nutrition of a reef coral across a light-availability gradient." The ISME Journal 14.4 (2020): 945-958.

Umhau B.P., Benitez-Nelson C.R., Close H.G., Hannides C.C.S, Motta L., Popp B.N., Blum J.D. and Drazen J.C. (2019) Seasonal and spatial changes in carbon and nitrogen fluxes estimated using 234Th:238U disequilibria in the North Pacific Subtropical Gyre. Marine Chemistry 217:103705 https://10.1016/j,marchem.2019.103705. (3)

Hetherington, Elizabeth D., et al. "Effects of chemical preservation on bulk and amino acid isotope ratios of zooplankton, fish, and squid tissues." Rapid Communications in Mass Spectrometry 33.10 (2019): 935-945.

Wall, Christopher B., et al. "Spatial variation in the biochemical and isotopic composition of corals during bleaching and recovery." Limnology and oceanography 64.5 (2019): 2011-2028.

Doherty, Shannon, et al. "Compound-Specific Isotope Analysis of Zooplankton Fecal Pellets: Insights into Dietary and Trophic Processes and Characterization of Fecal Pellets as Organic Matter End-Member." AGUFM 2019 (2019): PP42C-12.

Doherty, Thomas, et al. "A Spectral Analysis Method to Eliminate Methanol and Ethanol Interference with CRDS Measurements of Water Isotope Ratios: Insights, Opportunities, and Challenges." AGUFM 2019 (2019): H41Q-1962.

Liu, Qian, et al. "Light and temperature control the seasonal distribution of thaumarchaeota in the South Atlantic bight." The ISME journal (2018): 1.

Hebert, Craig E., and Brian N. Popp. "Temporal Trends in a Biomagnifying Contaminant: Application of Amino Acid Compound Specific Stable Nitrogen Isotope Analysis to the Interpretation of Bird Mercury Levels." Environmental toxicology and chemistry (2018).

Dolgova, Svetlana, et al. "Spatial Trends in a Biomagnifying Contaminant: Application of Amino Acid Compound Specific Stable Nitrogen Isotope Analysis to the Interpretation of Bird Mercury Levels." Environmental toxicology and chemistry(2018).

Sackett, Dana K., et al. "Carbon, Nitrogen, and Mercury Isotope Evidence for the Biogeochemical History of Mercury in Hawaiian Marine Bottomfish." Environmental science & technology 51.23 (2017): 13976-13984.

Hetherington, Elizabeth D., et al. "Spatial food web structure in the eastern tropical Pacific Ocean based on compound‐specific nitrogen isotope analysis of amino acids." Limnology and Oceanography 62.2 (2017): 541-560.

Gerringer, M. E., et al. "Comparative feeding ecology of abyssal and hadal fishes through stomach content and amino acid isotope analysis." Deep Sea Research Part I: Oceanographic Research Papers 121 (2017): 110-120.

Ohkouchi, Naohiko, et al. "Advances in the application of amino acid nitrogen isotopic analysis in ecological and biogeochemical studies." Organic Geochemistry (2017).

Wongkiew, Sumeth, et al. "Fate of nitrogen in floating-raft aquaponic systems using natural abundance nitrogen isotopic compositions." International Biodeterioration & Biodegradation125 (2017): 24-32.

Gerringer, M. E., et al. "Life history of abyssal and hadal fishes from otolith growth zones and oxygen isotopic compositions." Deep Sea Research Part I: Oceanographic Research Papers(2017).

Peavey, Lindsey Eleanor, et al. "Opportunism on the high seas: foraging ecology of olive ridley turtles in the eastern Pacific Ocean." Frontiers in Marine Science 4 (2017): 348.

Jarman, Catrine L., et al. "Diet of the prehistoric population of Rapa Nui (Easter Island, Chile) shows environmental adaptation and resilience." American journal of physical anthropology 164.2 (2017): 343-361. Jarman, Catrine L., et al. "Diet of the prehistoric population of Rapa Nui (Easter Island, Chile) shows environmental adaptation and resilience." American journal of physical anthropology 164.2 (2017): 343-361.

Richardson, Christina M., et al. "Submarine groundwater discharge drives biogeochemistry in two Hawaiian reefs." Limnology and Oceanography 62.S1 (2017).

Rowe, Julia A., et al. "Impacts of endangered seabirds on nutrient cycling in montane forest ecosystems of Hawaii." Pacific Science 71.4 (2017): 495-509.

Tolar, Bradley B., et al. "Oxidation of urea  derived nitrogen by thaumarchaeota dominated marine nitrifying communities." Environmental microbiology 19.12 (2017): 4838-4850.

Madigan, Daniel J., et al. "Intrinsic tracers reveal recent foraging ecology of giant Pacific bluefin tuna at their primary spawning grounds." Marine Ecology Progress Series 553 (2016): 253-266.

Pyle, Richard L., et al. "A comprehensive investigation of mesophotic coral ecosystems in the Hawaiian Archipelago." PeerJ 4 (2016): e2475.

Fackrell, Joseph K., et al. "Wastewater injection, aquifer biogeochemical reactions, and resultant groundwater N fluxes to coastal waters: Kā'anapali, Maui, Hawai'i." Marine pollution bulletin 110.1 (2016): 281-292.

Bradley, Christina J., et al. "Compound-specific isotopic analysis of amino acids reveals dietary changes in mesophotic coral-reef fish." Marine Ecology Progress Series 558 (2016): 65-79.

Hebert, Craig E., et al. "Amino acid specific stable nitrogen isotope values in avian tissues: insights from captive American Kestrels and wild Herring Gulls." Environmental Science & Technology 50.23 (2016): 12928-12937.

Tolar, B. B., Ross, M. J., Wallsgrove, N. J., Liu, Q., Aluwihare, L. I., Popp, B. N., & Hollibaugh, J. T. (2016). Contribution of ammonia oxidation to chemoautotrophy in Antarctic coastal waters. The ISME journal.

Bradley, C. J., Wallsgrove, N. J., Choy, C. A., Drazen, J. C., Hetherington, E. D., Hoen, D. K., & Popp, B. N. (2015). Trophic position estimates of marine teleosts using amino acid compound specific isotopic analysis.Limnology and Oceanography: Methods, 13(9), 476-493.

Choy, C. A., Popp, B. N., Hannides, C., & Drazen, J. C. (2015). Trophic structure and food resources of epipelagic and mesopelagic fishes in the North Pacific Subtropical Gyre ecosystem inferred from nitrogen isotopic compositions. Limnology and Oceanography, 60(4), 1156-1171.

Hannides, C., Drazen, J. C., & Popp, B. N. (2015). Mesopelagic zooplankton metabolic demand in the North Pacific Subtropical Gyre. Limnology and Oceanography, 60(2), 419-428.

Hunt, T., Larsen, T., Close, H., Jarman, J., & Popp, B. (2015). Why terrestrial diets in island environments? Evolutionary considerations of isotopic results from Rapa Nui. In The 80th Annual Meeting of the Society for American Archaeology

Hussey, N. E., MacNeil, M. A., Siple, M. C., Popp, B. N., Dudley, S. F., & Fisk, A. T. (2015). Expanded trophic complexity among large sharks. Food Webs, 4, 1-7.

Lorrain, A., Graham, B. S., Popp, B. N., Allain, V., Olson, R. J., Hunt, B. P., ... & Kaehler, S. (2015). Nitrogen isotopic baselines and implications for estimating foraging habitat and trophic position of yellowfin tuna in the Indian and Pacific Oceans. Deep Sea Research Part II: Topical Studies in Oceanography, 113, 188-198.

Nielsen, J. M., Popp, B. N., & Winder, M. (2015). Meta-analysis of amino acid stable nitrogen isotope ratios for estimating trophic position in marine organisms. Oecologia, 178(3), 631-642.

Papastamatiou, Y., Meyer, C. G., Kosaki, R. K., Wallsgrove, N. J., & Popp, B. N. (2015). Movements and foraging of predators associated with mesophotic coral reefs and their potential for linking ecological habitats.Marine Ecology Progress Series.

Arthur, K. E., Kelez, S., Larsen, T., Choy, C. A., & Popp, B. N. (2014). Tracing the biosynthetic source of essential amino acids in marine turtles using δ13C fingerprints. Ecology, 95(5), 1285-1293.

Bradley, C. J., Madigan, D. J., Block, B. A., & Popp, B. N. (2014). Amino Acid Isotope Incorporation and Enrichment Factors in Pacific Bluefin Tuna, Thunnus orientalis. PloS one, 9(1), e85818.

Hoen, D. K., Kim, S. L., Hussey, N. E., Wallsgrove, N. J., Drazen, J. C., & Popp, B. N. (2014). Amino acid ¹⁵N trophic enrichment factors of four large carnivorous fishes. Journal of Experimental Marine Biology and Ecology, 453, 76-83.

Madigan, D. J., Baumann, Z., Carlisle, A. B., Hoen, D. K., Popp, B. N., Dewar, H., ... & Fisher, N. S. (2014). Reconstructing transoceanic migration patterns of Pacific bluefin tuna using a chemical tracer toolbox. Ecology, 95(6), 1674-1683.

Penton, C. R., Deenik, J. L., Popp, B. N., Bruland, G. L., Engstrom, P., Mueller, J., ... & Tiedje, J. M. (2014). Assessing Nitrogen Transformations in a Flooded Agroecosystem Using the Isotope Pairing Technique and Nitrogen Functional Gene Abundances. Soil Science.

Vander Zanden, H. B., Arthur, K. E., Bolten, A. B., Popp, B. N., Lagueux, C. J., Harrison, E., & Campbell, C. L. (2014). OLIVE RIDLEY PROJECT: ACTIVELY FIGHTING GHOST NETS IN THE INDIAN OCEAN. INDIAN OCEAN TURTLE NEWSLETTER, 69(4), 23.

Wolhowe, M. D., Prahl, F. G., White, A. E., Popp, B. N., & Rosas-Navarro, A. (2014). A biomarker perspective on coccolithophorid growth and export in a stratified sea. Progress in Oceanography, 122, 65-76.

Beman, J. M., Shih, J. L., & Popp, B. N. (2013). Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean. The ISME journal, 7(11), 2192-2205.

Blum, J. D., Popp, B. N., Drazen, J. C., Choy, C. A., & Johnson, M. W. (2013). Methylmercury production below the mixed layer in the North Pacific Ocean. Nature Geoscience, 6(10), 879-884.

Decima, M., Landry, M. R., & Popp, B. N. (2013). Environmental perturbation effects on baseline d15N values and zooplankton trophic flexibility in the southern California Current Ecosystem. Limnol. Oceanogr, 58(2), 624-634.

Hannides, C. C., Popp, B. N., Choy, C. A., & Drazen, J. C. (2013). Midwater zooplankton and suspended particle dynamics in the North Pacific Subtropical Gyre: A stable isotope perspective. Limnol. Oceanogr, 58(6), 1931-1946.

Penton, C. R., Deenik, J. L., Popp, B. N., Bruland, G. L., Engstrom, P., St Louis, D., & Tiedje, J. (2013). Importance of sub-surface rhizosphere-mediated coupled nitrification denitrification in a flooded agroecosystem in Hawaii. Soil Biology and Biochemistry, 57, 362-373.

Vander Zanden, H. B., Arthur, K. E., Bolten, A. B., Popp, B. N., Lagueux, C. J., Harrison, E., ... & Bjorndal, K. A. (2013). Trophic ecology of a green turtle breeding population. Marine Ecology Progress Series, 476, 237-249.

White, A. E., Foster, R. A., Benitez-Nelson, C. R., Masque, P., Verdeny, E., Popp, B. N., ... & Prahl, F. G. (2013). Nitrogen fixation in the Gulf of California and the Eastern Tropical North Pacific. Progress in Oceanography, 109, 1-17.

Beman, J. M., Popp, B. N., & Alford, S. E. (2012). Quantification of ammonia oxidation rates and ammonia-oxidizing archaea and bacteria at high resolution in the Gulf of California and eastern tropical North Pacific Ocean. Limnol. Oceanogr, 57(3), 711-726.

Choy, C. A., Davison, P. C., Drazen, J. C., Flynn, A., Gier, E. J., Hoffman, J. C., ... & Sutton, T. T. (2012). Global trophic position comparison of two dominant mesopelagic fish families (Myctophidae, Stomiidae) using amino acid nitrogen isotopic analyses. PloS one, 7(11), e50133

Madigan, D. J., Litvin, S. Y., Popp, B. N., Carlisle, A. B., Farwell, C. J., & Block, B. A. (2012). Tissue turnover rates and isotopic trophic discrimination factors in the endothermic teleost, Pacific Bluefin Tuna (Thunnus orientalis). PloS one, 7(11), e49220.

O Malley J. M., Drazen J. C., Popp B. N., Gier E., Toonen R. J. (2012). Spatial Variability in Growth and Prey Availability of Lobsters in the Northwestern Hawaiian Islands. Marine Ecology Progress Series 449, 211-220.

Seminoff, J. A., Benson, S. R., Arthur, K. E., Eguchi, T., Dutton, P. H., Tapilatu, R. F., & Popp, B. N. (2012). Stable isotope tracking of endangered sea turtles: validation with satellite telemetry and δ15N analysis of amino acids. PLoS One, 7(5), e37403.

Kalansky J. F., Robinson R. S. and Popp B. N. (2011). Insights into nitrogen cycling in the western Gulf of California from nitrogen isotopic composition of diatom-bound organic matter. Geochemistry, Geophysics, and Geosystems 12, Q06015, doi:10.1029/2010GC003437.

Dale J. J., Wallsgrove N. J., Popp B. N. and Holland K. (2011). Foraging ecology and nursery habitat use of a benthic stringray from stomach content, bulk and amino acid stable isotope analysis. Marine Ecology Progress Series 44:221-236.

Decima, M., Landry, M. R., & Popp, B. N. (2011). The 1998/1999 El Niño Southern Oscillation event and the isotopic content of amino acids in California Current zooplankton: effects on baseline 15N and trophic structure.Mesozooplankton trophic variability in a changing ocean, 145.

Beman J. M., Chow C.-E., King A., Feng Y., Fuhrman J., Andersson A., Bates N. R., Popp B. N. and Hutchins D. (2011). Global declines in marine nitrification rates as a consequence of ocean acidification. Proceeding of the National Academy of Sciences 108:208-211, www.pnas.org/cgi/doi/10.1073/pnas.1011053108.

Christman G. D., Cottrell M. T., Popp B. N., Gier E. and Kirchman D. L. (2011). Abundance, Diversity, and Activity of Ammonia-Oxidizing Prokaryotes in the Coastal Arctic Ocean in Summer and Winter. Applied and Environmental Microbiology, 77:2026-2034, doi:10.1128/AEM.01907-10.

Uchikawa J., Popp B. N., Schoonmaker J. E., Timmermann A. and Lorenz S. J. (2010). Holocene aridification in Hawaii based on geochemical and climate modeling evidence: Dynamic response to a weakening of the equatorial cold tongue. Quaternary Science Reviews 29: 3057-3066, doi:10.1016/j.quascirev.2010.07.014.

Olson R. J., Popp B. N., Graham B. S., Lopez-Ibarra G. A., Galvan-Magana F., Lennert-Cody C. E., Bocanegra-Castillo N., Wallsgrove N. J., Gier E., Alatorre-Ramirez V., Ballance L. T. and Fry B. (2010). Food web inferences of stable isotope spatial patterns in copepods and yellofin tuna in the pelagic eastern Pacific Ocean. Progress in Oceanography 86: 124-138, doi:10.1016/j.pocean.2010.04.026.

Hannides, C. C. S., M. R. Landry, and B. N. Popp. (2010). Understanding climate-driven change in zooplankton communities: a case study from the North Pacific Subtropical Gyre. ICES Journal of Marine Science 300: 35-39.