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1. A. M. Doglioli, B. Blanke, S. Speich, and G. Lapeyre. Tracking coherent structures in a regional ocean model with wavelet analysis: Application to Cape basin eddies. J. Geophys. Res., 112:C05043, 2007. Keyword(s): tracking. [bibtex-entry]



2. Changming Dong, James C. McWilliams, and Alexander F. Schepetkin. Island wakes in deep water. J. Phys. Oceanogr., 37:962-981, 2007. Keyword(s): island, wake. [Abstract] [bibtex-entry]



3. Arthur J. Miller, Douglas J. Neilson, Douglas S. Luther, Myrl C. Hendershott, Bruce D. Cornuelle, Peter F. Wprcester, Matthew A. Dsieciuch, Brian D. Dushaw, Bruce M. Howe, Julia C. Levin, Hernan G. Arango, and Dale B. Haigvogel. Barotropic Rossby wave radiation from a model Gulf Stream. Geophys. Res. Letters, 34:L23613, 2007. Keyword(s): barotropic, Gulf Stream. [bibtex-entry]



4. Jin-Song von Storch, Hideharu Sasaki, and Jochem Marotzke. Wind-generated Power input to the deep ocean: and estimate using a 1/10$^{\circ}$ general circulation model. J. Phys. Oceanogr., 37:657-672, 2007. Keyword(s): energy, OFES, wind power. [bibtex-entry]



5. H. Sasaki, M. Nonaka, Y. Masumoto, Y Sasai, H Uehara, and H. Sakuma. High resolution numerical modelling of the atmosphere and ocean, chapter An eddy resolving hindcast simulation of the quasi-global ocean from 1950 to 2003 on the Earth Simulator. Springer, New York, 2006. Note: Accepted. [bibtex-entry]



6. Iskhaq Iskandar, Tomoki Tozuka, Hideharu Sasaki, and Yukio Masumoto. Intraseasonal variations of surface and subsurface currents off Java as simulated in a high-resolution ocean general circulation model. J. Geophys. Res., 111(C12015), 2006. Keyword(s): OFES, intraseasonal, Java. [bibtex-entry]



7. Christophe Menkes, Jerome Vialard, Sean C. Kennan, Jean-Philippe Boulanger, and Gurvan Madec. A modeling of the impact of Tropical Instability Waves on the heat budget of the eastern Equatorial Pacific. Journal of Physical Oceanography, 36:847-865, 2006. Keyword(s): TIW, heat flux. [bibtex-entry]



8. Mototaka Nakamura and T. Kagimoto. Potential vorticity and eddy potential enstrophy in the North Atlantic Ocean simulated by a global eddy-resolving model. Dynamics of Atmospheres and Oceans, 41:28-59, 2006. Keyword(s): PV, eddy potential enstrophy. [bibtex-entry]



9. Mototaka Nakamura and T. Kagimoto. Transient wave activity and its fluxes in the North Atlantic ocean simulated by a global eddy-resolving model. Dynamics of Atmospheres and Oceans, 41:60-84, 2006. Keyword(s): wave activity. [bibtex-entry]



10. Anne-Charlotte Peter, Mathieu Le Hénaff, Yves du Penhoat, Christophe Eugene Menkes, Frederic Marin, Jérôme Vialard, Guy Caniaux, and Alban Lazar. A model study of the seasonal mixed-layer heat budget in the tropical Atlantic. submitted to J. Phys. Oceanogr., 2006. Keyword(s): TIW, heat flux. [bibtex-entry]



11. Hideyuki Nakano and Hiroyasu Hasumi. A series of zonal jets embedded in the broad zonal flows in the Pacific obtained in eddy-permitting ocean general circulation models. J. Phys. Oceanogr., 35:474-488, 2005. Keyword(s): Zonal Jets, Jets. [bibtex-entry]



12. Paul Williams. Modelling climate change: the role of unresolved processes. Phil. Trans. R. Soc. A, 363:2931-2946, 2005. Keyword(s): stochastic modelling. [Abstract] [bibtex-entry]



13. Shuiming Chen and Bo Qiu. Seasonal variability of the south equatorial countercurrent. J. Geophys. Res., 109(C08003), 2004. Keyword(s): reduced gravity model, SECC, rossby wave model. [bibtex-entry]



14. James T. Potemra, Susan L. Hautala, and Janet Sprintall. Vertical structure of Indonesian throughflow in a large-scale model. Deep-Sea Res., II(50):2143-2161, 2003. Keyword(s): vertical structure, Indonesia, throughflow. [bibtex-entry]



15. A. M. Treguier, O. Boebel, B. Barnier, and G. Madec. Agulhas eddy fluxes in a 1/6 Atlantic model. Deep-Sea Res., II(50):251-280, 2003. Keyword(s): Agulhas. [bibtex-entry]



16. F. Bonjean and G. S. E. Lagerloef. Diagnostic Model and Analysis of the Surface Currents in the Tropical Pacific Ocean. J. of Phys. Oceanogr., 32:2938-2954, 2002. [bibtex-entry]



17. Gary D.Egbert and Svetlana Y.Erofeeva. Efficient inverse modeling of barotropic ocean tides. J. Atmos. Oceanogr. Tech., 19:183-204, 2002. Keyword(s): inverse, modeling, barotropic, tide. [bibtex-entry]



18. K. Donohue, E. Firing, G. Rowe, A. Ishida, and H. Mitsudera. Equatorial pacific subsurface countercurrents: A model-data comparison in stream coordinates. J. Phys. Oceanogr., 32:1,252-1,264, 2002. [bibtex-entry]



19. James T. Potemra and Susan L. Hautala. Interaction between the Indonesian seas and the Indian ocean in observations and numerical models. J. Phys. Oceanogr., 32:1838-1854, 2002. Keyword(s): ITF. [bibtex-entry]



20. Jerome Vialard, P. Delecluse, and C. E. Menkes. A modeling study of salinity variability and its effect in the tropical Pacific Ocean during the 1993-1999 period. J. Geophys. Res., 107(C12), 2002. Keyword(s): TIW, equator, tropics salinity. [bibtex-entry]



21. Jerome Vialard, C. E. Menkes, Jean-Philippe. Boulanger, P. Delecluse, E. Guilyardi, M. J. McPhaden, and G. Madec. A Model Study of Oceanic Mechanisms Affecting Equatorial Pacific Sea Surface Temperature during the 1997-98 El Niño. J. Phys. Oceanogr., 31:1649-1675, 2002. Keyword(s): TIW, equator, tropics, sst. [bibtex-entry]



22. Roxana C. Wajsowicz. A modified sverdrup model fo the Atlantic and Carribean circulation. J. Phys. Oceanogr., 32:973-993, 2002. Keyword(s): sverdrup model, atlantic, carribean, circulation. [bibtex-entry]



23. Y. Masumoto, T. Kagimoto, M. Yoshida, M. Fukuda, N. Hirose, and T. Yamagata. Intraseasonal Eddies in the Sulawesi sea simulated in an ocean general circulation model. Geophys. Res. Letters, 28(8):1631-1634, 2001. Keyword(s): intraseasonal, Eddies, Sulawesi, circulation, model. [bibtex-entry]



24. J.P. boulanger and Christophe Menkes. The trident Pacific model. Part 2: role of long equatorial wave reflection on sea surface temperature anomalies during the 1993-1998 TOPEX/POSEIDON period. Climate Dynamics, 17:175-186, 2001. Keyword(s): long equatorial wave, TOPEX. [bibtex-entry]



25. Pavel S. Berloff and James C. McWilliams. Quasigeostrophic Dynamics of the Western Boundary Current. J. Phys. Oceanogr., 29:2607-2634, 1999. Keyword(s): western boundary, instability. [Abstract] [bibtex-entry]



26. Bruno Blanke, M. Arhan, G. Madec, and S. Roche. Warm water paths in the equatorial Atlantic as diagnosed with a general circulation model. J. Phys. Oceanogr., 29:2753-2768, 1999. Keyword(s): Lagrangian, ariane. [bibtex-entry]



27. Eric Blayo and Laurent Debreu. Adaptive mesh refinement for finite-difference ocean models: first experiments. J. Phys. Oceanogr., 29:1239-1250, 1999. Keyword(s): model technics, meshm refinement, finite-difference. [bibtex-entry]



28. G. Madec, P. Delecluse, M. Imbard, and C. Levy. OPA 8.1 Ocean General circulation model reference manual. Notes du p�e de mod�isation, Institut Pierre Simon Laplace (IPSL), 11, 1999. Keyword(s): OPA. [bibtex-entry]



29. S. Masina and S. G. H. Philander. An analysis of tropical instability waves in a numerical model of the Pacific ocean: 1. Spatial variability of the waves. J. Geophys. Res., 104(C12):28613-29635, 1999. Keyword(s): TIW, wavelet. [bibtex-entry]



30. S. Masina, S. G. H. Philander, and A. B. G. Bush. An analysis of tropical instability waves in a numerical model of the Pacific ocean: 2. Generation and energetics of the waves. J. Geophys. Res., 104(C12):29637-29661, 1999. Keyword(s): TIW, energy. [bibtex-entry]



31. K. Donohue and M. Wimbush. Model results of flow instability in the tropical Pacific Ocean. J. Geophys. Res., 103:21,401-21,412, 1998. [bibtex-entry]



32. T. Reynaud, P. Legrand, H. Mercier, and B. Barnier. A new analysis of hydrographic data in the Atlantic and its application to inverse modeling study. International WOCE Newsletter, 32:29-31, 1998. Keyword(s): climatology. [bibtex-entry]



33. Lewis M. Rothstein, Rong-Hua Zhang, Antonio J. Busalacchi, and Dake Chen. A numerical simulation of the mean water pathways in the subtropical and tropical Pacific ocean. J. Phys. Oceanogr., 28:322-343, 1998. Keyword(s): water pathways, tropical cells, subtropical cells, reduced gravity model, western Pacific. [bibtex-entry]



34. A. Schiller, J. S. Godfrey, P. C. McInstosh, G. Meyers, and S. E. Wijffels. Seasonal near-surface dynamics and thermodynamcis of the Indian ocean and Indonesian throughflow in a global ocean general circulation model. J. Phys. Oceanogr., 28:2288-2312, 1998. Keyword(s): near-surface, dynamics, thermodynamics, Indian, Indonesia, throughflow. [bibtex-entry]



35. R. A. Weller, M. F. Baumgartner, S. A. Josey, A. S. Fischer, and J. C. Kindle. Atmospheric forcing in the Arabian Sea during 1994-1995: observations and comparisons with climatology and models. Deep-Sea Res., 2(45):1,961-1,999, 1998. Keyword(s): atmospheric, arabian sea, climatology, model. [bibtex-entry]



36. V. O. Ivchenko, A. M. Treguier, and S. E. Best. A kinetic energy budget and internal instabilities in the Fine Resolution Antarctic Model. J. Phys. Ocean., 27:5-22, 1997. Keyword(s): kinetic energy. [bibtex-entry]



37. J. Marshall, A. Adcroft, C. Hill, L. Perelman, and C. Heisey. A finite-volume, incompressible Navier-Stokes model for studies of the ocean on parallel computers. J. Geophys. Res., 102:5753-5766, 1997. [bibtex-entry]



38. Niklas Schneider and Tim P. Barnett. Indonesian throughflow in a coupled general circulation model. J. Geophys. Res., 102(C6):12,341-12,358, 1997. Keyword(s): Indonesia, throughflow, circulation, model. [bibtex-entry]



39. D. E. Harrison. Vertical velocity in the central tropical Pacific: a circulation model perspective for JGOFS. Deep-Sea Res., 43:687-705, 1996. [bibtex-entry]



40. Yasushi Fukamachi, Julian P.McCreary, and Jeffrey A.Proehl. Instability of density fronts in layer and continuously stratified models. J. Geophys. Res., 100(C2):2559-2577, 1995. Keyword(s): instability, density fronts, layer, stratified model. [bibtex-entry]



41. W. G. Large, J. C. McWilliams, and S. C. Doney. Ocean vertical mixing: a review and a model with a nonlocal boundary layer parameterization. Rev. Geophys., 32:363-404, 1994. Keyword(s): mixing, parameterization. [bibtex-entry]



42. Bruno Blanke and P. Delecluse. Variability of the Tropical Atlantic Ocean simulated by a general circulation model with two different mixed layer physics. J. Phys. Oceanogr., 23:1363-1388, 1993. Keyword(s): mixing, model, mixed layer. [bibtex-entry]



43. M. Inoue and S. E. Welsh. Modeling seasonal variability in the wind-driven upper-layer circulation of the Indo-Pacific region. J. Phys. Oceanogr., 23:1411-1436, 1993. [bibtex-entry]



44. J. P. McCreary and Z. Yu. Equatorial dynamics in a 2.5-layer model. Prog. Oceanogr., 29:61-132, 1992. Keyword(s): TIW, equator, tropics. [bibtex-entry]



45. R. M. Ponte and D.S. Gutzler. 40-60 day oscillations in the western tropical Pacific: Results from an eddy-resolving global ocean model. Geophys. Res. Letters, 19:1475-1478, 1992. Keyword(s): intraseasonal, ITF. [bibtex-entry]



46. Albert J. Semtner and R. M. Chervin. Ocean General Circulation from a global eddy-resolving model. J. Geophys. Res., 97:5493-5550, 1992. Keyword(s): OGCM, numerical, simulation, circulation. [bibtex-entry]



47. P. Gent. The heat budget of the TOGA-COARE domain in an ocean model. J. Geophys. Res., 96:3323-3330, 1991. Keyword(s): raintemp. [bibtex-entry]



48. Peter R. Gent and James C. McWilliams. Isopycnal Mixing in Ocean Circulation Models. J. Phys. Oceanogr., 20:150-155, 1990. Keyword(s): mixing. [bibtex-entry]



49. D. S. Battisti. Dynamics and thermodynamics of a warming event in a coupled tropical atmosphere-ocean model. J. Atmos. Sci, 45:2889-2919, 1988. [bibtex-entry]



50. P. S. Schopf and M. J. Suarez. Vacillations in a coupled ocean-atmosphere model. J. Atmos. Sci, 45:549-566, 1988. Keyword(s): delayed, ENSO. [bibtex-entry]



51. Harry L. Bryden and Esther C. Brady. Diagnostic model of the three-dimensional circulation in the upper equatorial Pacific Ocean. J. Phys. Oceanogr., 15:1255-1273, 1985. Keyword(s): TIWe. [bibtex-entry]



52. J. McCreary. Modeling Equatorial Ocean Circulation. Ann. Rev. Fluid Mech., 17:359-409, 1985. Keyword(s): model, equatorial. [bibtex-entry]



53. J. McCreary. A Linear Stratified Ocean Model of the Equatorial Undercurrent. Phil. Trans. R. Soc. Lond., 298(1444):603-635, 1981. Keyword(s): model, equatorial. [bibtex-entry]



54. M. D. Cox. Generation and propagation of 30-day waves in a numerical model of the Pacific. J. Phys. Oceanogr., 10:1168-1186, 1980. Keyword(s): TIW, equator, tropics, instability. [bibtex-entry]



55. Charles Curtis Eriksen. Measurements and Models of Fine Structure, Internal Gravity Waves, and Wave Breaking in the Deep Ocean. J. Geophys. Res., 83:2989-3009, 1978. [bibtex-entry]



56. M. E. Fiadeiro and H. Craig. Three-dimensional modeling of tracers in the deep Pacific Ocean: 1. Salinity and oxygen. J. Marine Res., 36:323-355, 1978. [bibtex-entry]



57. William R. Holland. The role of mesoscale eddies in the general circulation of the Ocean -- Numerical Experiments using a wind-driven quasi-geostrophic model. J. Phys. Oceanogr., 8:363-392, 1978. Keyword(s): eddies. [bibtex-entry]



58. R.C. Beardsley. The ``slice-cylinder'' laboratory model of the wind-driven ocean circulation. Part 2. Oscillatory forcing and Rossby wave resonance. J. Fluid Mech., 69:41-64, 1975. [bibtex-entry]



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60. G. Assaf and A. Hecht. Sea straits: a dynamical model. Deep-Sea Res., 21:947-958, 1974. [bibtex-entry]



61. R. C. Beardsley and J. F. Festa. A numerical model of convection driven by a surface stress and non-uniform horizontal heating. J. Phys. Oceanogr., 2:444-455, 1972. [bibtex-entry]



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