SeaWifs Fall Chl

OCN 626: Marine Microplankton Ecology Course Syllabus

Fall Semester 2008

Course Instructors:

Matthew Church (mjchurch@hawaii.edu), Office: MSB 612, 6-8779

Grieg Steward (grieg@hawaii.edu), Office: MSB 631, 6-6775

Karen Selph (selph@hawaii.edu), Office: MSB 608, 6-7941

 

Lectures: Tuesday and Thursday 0900-1015, MSB 307

Afternoon Lab: Tuesday, 1500-16:15 MSB 315


4 graduate course credits

 

Marine Microplankton Ecology (Ocean 626) is one of several required core courses for graduate students in the Biological Oceanography Division in the Department of Oceanography at the University of Hawaii.  The course includes two lectures and one afternoon laboratory per week, and covers fundamental concepts in biological oceanography specifically related to the ecology of marine microbes.  Topics will include marine microbial diversity and biogeography, environmental and biological controls on plankton growth and mortality, and the role of microbes to bioelemental cycling, including descriptions on how microbial metabolism and biomass influence fluxes and inventories of carbon, nitrogen, and phosphorus in the biosphere. 

Grades will be earned based on three criteria: 1) Regular attendance and participation in weekly lectures and laboratories;  2) Performance on the mid-term and final exams;  3) Performance on an oral (10-15 min) and written (5-10 page) presentation of a data analysis project.  Projects involve learning to retrieve, manipulate, and interpret data from database of the Hawaii Ocean Time-series program. Students are expected to attend all lectures and afternoon labs and are expected to come to the laboratories having read the required reading material. Grades will be weighted as follows: attendance and participation in lectures and labs (20%), mid-term and final exams (25% each), and written and oral presentations (15% each).

There are no required text books for the course; however, students will be assigned readings that include both primary literature and textbook chapters that the instructors feel are pertinent to the weekly themes.

Office hours are by appointment; if you would like to meet with instructors you should contact them by email or in person to set up a mutually convenient time to meet. 

Student Learning Outcomes:

1) Students should be able to define the major forms of life in the sea and describe the characteristics that distinguish these forms.

 

2) Students should be able to explain how microorganisms influence bioelemental cycling in the sea, specifically related to cycles of carbon and nitrogen.

 

3) Students should be able to define processes that control microbial abundances and growth in the marine environment.

 

4) Students should be able to identify and explain distinguishing microbial and biogeochemical features of the following ocean ecosystems: oligotrophic ocean gyres; high nutrient, low chlorophyll regions; coastal and equatorial upwelling regions; and high latitude polar regions.

 

5) Students should be able to describe methodological approaches appropriate for evaluating: microbial diversity, biomass, growth, and mortality.

 

 


Fall 2008 OCN 626 “Marine Microplankton Ecology Course Schedule

Date

Time

Location

Topic

Lecturer

Readings

Aug. 26, 2008

9:00-10:15

MSB 307

Introduction/

Marine planktonic food webs

Church/

Steward

 

Aug. 26, 2008

3-4:15PM

MSB 315

Introducing the Hawaii Ocean Time-series (HOT) program

Church

 Karl and Lukas (1996)

August 28, 2007

9:00-10:15

MSB 307

The ocean as a habitat

Church

 

September 2, 2008

9:00-10:15

MSB 307

Life at the microscale

Steward

 

September 2, 2008

3:00-4:15

MSB 315

Sample prep (microscopy, plating, fixing, filtrations)

Church/Steward

 

September 4, 2008

9:00-10:15

MSB 307

Bioenergetics/Classification of life

Steward

 

September 9, 2008

9:00-10:15

MSB 307

Survey of marine prokaryotes

Steward

 

September 9, 2008

3:00-4:15

MSB 315

Microscopy-virus and bacterial counts

Church/Steward

 

September 11, 2008

9:00-10:15

MSB 307

The molecular revolution

Steward

 

September 16, 2008

9:00-10:15

MSB 307

Genomes to biomes

Steward

 Beja et al. 

(2000, 2001)

September 16, 2008

3:00-4:15

MSB 315

Measuring chlorophyll

Church/Steward

 

September 18, 2008

9:00-10:15

MSB 307

Biomass in the sea

Church

Cho and Azam (1990); Holm-Hansen (1969); Fuduka et al. (1998); Whitman (1998)

September 23, 2008

9:00-10:15

MSB 307

Plankton Biomass and Growth 

Church

 Ducklow (2000, 2003)

September 23, 2008

3:00-4:15

MSB 315

Extracting DNA

Church/Steward

 

September 25, 2008

9:00-10:15

MSB 307

Primary production

Church

 Bender et al. (1987); Cullen (2001); Laws et al. (1987); Sverdrup (1953); Riser and Johnson (2008)


 

Date

Time

Location

Topic

Lecturer

Readings

September 30, 2008

9:00-10:15

MSB 307

Bacterial production

Church

Kirchman (2004); Pomeroy (1974), del Giorgio and Duarte (2002); del Giorgio et al. (1997)

September 30, 2008

3:00-4:15

MSB 315

 PCR amplification

Church/Steward

 

October 2, 2008

9:00-10:15

MSB 307

Community metabolism

Church

 Buesseler et al. (2007), Ducklow et al. (2001)

October 7, 2008

9:00-10:15

MSB 307

The biological pump

Church

 Carlson et al (1994)

October 7, 2008

3:00-4:15

MSB 315

 Gel visualization and TRFLP

Church/Steward

 

October 9, 2008

9:00-10:15

MSB 307

Mesocosm studies of microbial ecology

Steward

 

October 14, 2008

9:00-10:15

MSB 307

Nutrient cycling and elemental stoichiometry

Church

Arrigo (2005)

October 14, 2008

3:00-4:15

MSB 315

Sequencing analyses/TRFLP

Church/Steward

 

October 16, 2008

9:00-10:15

MSB 307

The HNLC condition

Church

 Boyd et al. (2007), Cullen (1991)

October 21, 2008

 

 

Distribution of midterm-

Due October 30, 2008 (9 AM)

 

 

October 21, 2008

9:00-10:15

MSB 307

Microbes and climate

Church

 

October 21, 2008

3:00-4:15

MSB 315

Measuring PC/PN/TOC

Church/Steward

 

October 23, 2008

9:00-10:15

MSB 307

Biological-physical coupling

Church

 

October 28, 2008

9:00-10:15

MSB 307

Introduction to marine viruses

Steward

 

October 28, 2008

3:00-4:15